MultiGeMS (Multi-sample Genotype Model Selection) is a multiple sample single nucleotide variant (SNV) caller that works with alignment files of high-throughput sequencing (HTS) data. MultiGeMS calls SNVs based on a statistical model selection procedure and accounts for enzymatic substitution sequencing errors.
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MultiGeMS: Detection of SNVs from Multiple Samples Using Model Selection on High-Throughput Sequencing Data.
Murillo G, You N, Su X, Cui W, Reilly MP, Li M, Ning K, Cui X.
Bioinformatics. 2016 Jan 18. pii: btv753