MultiBind is a novel computational method, for recognition of binding patterns common to a set of protein structures. It performs a multiple alignment between protein binding sites in the absence of overall sequence, fold or binding partner similarity. MultiBind recognizes common spatial arrangements of physico-chemical properties in the binding sites. These should be important for recognition of function, prediction of binding and drug design.
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Shulman-Peleg A, Shatsky M, Nussinov R. and Wolfson H.J.
MultiBind and MAPPIS: Web servers for multiple alignment of protein 3D binding sites and their interactions,
Nucleic Acids Research, 2008, Vol. 36, W260-W264.