MSTgold calculates minimum spanning trees (MST) from protein and nucleotide sequences, from binary characters and SNPs, and from tab-delimited data such as microsatellite data. It also estimates the number of different MSTs from a data set, bootstraps MSTs, and identifies the most reliable tree among a set of equal-length MSTs.
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Stephen J. Salipante and Barry G. Hall
Inadequacies of Minimum Spanning Trees in Molecular Epidemiology
J. Clin. Microbiol. October 2011 vol. 49 no. 10 3568-3575