MSNovo is a new software to peptide de novo sequencing, which has the following advanced features. (1) It works on data generated from both LCQ and LTQ mass spectrometers and interprets singly, doubly, and triply charged ions. (2) It integrates a new probabilistic scoring function with a mass array-based dynamic programming algorithm.
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Anal Chem. 2007 Jul 1;79(13):4870-8. Epub 2007 Jun 6.
MSNovo: a dynamic programming algorithm for de novo peptide sequencing via tandem mass spectrometry.
Mo L, Dutta D, Wan Y, Chen T.