MSI is an ongoing project aimed at the development of software for the computational simulation of spatial processes in immunity. The software is an open source development project; there are several options for acquiring the program, including the complete source code, or just pre-built binaries.
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Source Code Biol Med. 2008 Apr 28;3:6. doi: 10.1186/1751-0473-3-6.
The Multiscale Systems Immunology project: software for cell-based immunological simulation.
Mitha F, Lucas TA, Feng F, Kepler TB, Chan C.