MQLS (More Powerful Quasi-Likelihood Score Test)can handle arbitrary number of markers and samples and have other features that we found useful in our studies, such as pedigree checking and input/output formats. In addition to genotyped markers, this version can carry out association tests using imputed allele counts (“dosages”) generated by MACH and an empirical variance estimator.
- Linux / Windows / MacOsX
- C Compier
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Thornton T., McPeek M. S. (2007)
Case-Control Association Testing with Related Individuals: A More Powerful Quasi-Likelihood Score Test.
Am J Hum Genet, 81, 321-337.