MOPAT (Motif Pair Tree) identifies CRMs through the identification of motif modules, groups of motifs co-ccurring in multiple CRMs. It can identify orthologous CRMs without multiple alignments. It can also find CRMs given a large number of known motifs.
- Linux/ Windows
:: MORE INFORMATION
Hu J, Hu H, Li X.
MOPAT: a graph-based method to predict recurrent cis-regulatory modules from known motifs.
Nucleic Acids Res. 2008; 36(13):4488-97