Aug 082014
 

MOPAT

:: DESCRIPTION

MOPAT (Motif Pair Tree) identifies CRMs through the identification of motif modules, groups of motifs co-ccurring in multiple CRMs. It can identify orthologous CRMs without multiple alignments. It can also find CRMs given a large number of known motifs.

::DEVELOPER

Jianfei Hu: rochujf@gmail.com, Haiyan Nancy Hu , Xiaoman Shawn Li

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/ Windows

:: DOWNLOAD

 MOPAT

:: MORE INFORMATION

Citation:

Hu J, Hu H, Li X.
MOPAT: a graph-based method to predict recurrent cis-regulatory modules from known motifs.
Nucleic Acids Res. 2008; 36(13):4488-97

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