mobility 0.1 – Genomic Fluidity Perl & MATLAB Scripts

mobility 0.1

:: DESCRIPTION

mobility is a collection of Perl scripts to calculate gene-level similarity among annotated genomes. The scripts can be executed from the command line and the only dependencies are BioPerl and NCBI BLAST. Separately, we include a MATLAB script to calculate fluidity and its variance directly from matrices of shared and total gene counts.

::DEVELOPER

WeitzGroup@GeorgiaTech

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

mobility

:: MORE INFORMATION

Citation:

Kislyuk et al.
Genomic fluidity: an integrative view of gene diversity within microbial populations
BMC Genomics 12: 32 (2011).

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