Jul 312013
 

MLTreeMap 2.061

:: DESCRIPTION

MLTreeMap is a tool that employs full maximum likelihood to give insights into phylogenetic and functional properties of metagenomes and the underlying microbial communities. It does so by detecting and phylotyping a series of relevant marker genes on the submitted DNA fragments. Among these genes are protein coding phylogenetic markers, SSU rRNA genes and markers for important functional pathways.

::DEVELOPER

Christian von Mering (mering@imls.uzh.ch)

:: SCREENSHOTS

n/a

:: REQUIREMENTS

  • Linux
  • Blast
  • Gblocks

:: DOWNLOAD

 MLTreeMap

:: MORE INFORMATION

Citation

MLTreeMap–accurate Maximum Likelihood placement of environmental DNA sequences into taxonomic and functional reference phylogenies.
Stark M, Berger SA, Stamatakis A, von Mering C.
BMC Genomics. 2010 Aug 5;11:461. doi: 10.1186/1471-2164-11-461.

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