miRPro is a tool for miRNA-seq analysis. It can quantify known and novel miRNAs in small RNA-seq data and provide useful functions such as IsomiR detection and “arm switching” identification, miRNA family quantification, and read cataloging in terms of genome annotation.
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mirPRo-a novel standalone program for differential expression and variation analysis of miRNAs.
Shi J, Dong M, Li L, Liu L, Luz-Madrigal A, Tsonis PA, Del Rio-Tsonis K, Liang C.
Sci Rep. 2015 Oct 5;5:14617. doi: 10.1038/srep14617.