Sep 062013
 

MirCheck

:: DESCRIPTION

MIRcheck is a perl script designed to identify RNA sequences with secondary structures similar to plant miRNAs.  It compares a potential miRNA and precursor against a set of secondary structure constraints derived from known plant miRNA precursors.  The potential miRNA and precursor “pass” MIRcheck if all requirements are met, and “fail” MIRcheck if one or more is not.

::DEVELOPER

Bartel Lab at Whitehead Institute for Biomedical Research

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/ Windows/MacOsX
  • perl

:: DOWNLOAD

 MirCheck

:: MORE INFORMATION

Citation

Mol Cell. 2004 Jun 18;14(6):787-99.
Computational identification of plant microRNAs and their targets, including a stress-induced miRNA.
Jones-Rhoades MW, Bartel DP.

1,069 views

Sorry, the comment form is closed at this time.