MirAlign is an online tool to identify homologous miRNA genes. This tool can search for new miRNA candidates by requiring structural similarity and sequence conservations between new candidates and experimentally identified miRNAs.
Bioinformatics Division / Center for Synthetic and Systems Biology, TNLIST
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Bioinformatics. 2005 Sep 15;21(18):3610-4. Epub 2005 Jun 30.
MicroRNA identification based on sequence and structure alignment.
Wang X, Zhang J, Li F, Gu J, He T, Zhang X, Li Y.