MicroRazerS is a tool optimized for mapping small RNAs onto a reference genome. It is an order of magnitude faster than Mega BLAST and comparable in speed with other short read mapping tools. In addition, it is more sensitive and easy to handle and adjust.
Anne-Katrin Emde, Marcel Grunert, David Weese, Knut Reinert and Silke Sperling
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Anne-Katrin Emde, Marcel Grunert, David Weese, Knut Reinert and Silke Sperling.
MicroRazerS: rapid alignment of small RNA reads.
Bioinformatics (2010) 26 (1): 123-124