Jun 082014
 

mGSZ 1.0 / GSZ

:: DESCRIPTION

mGSZ is a gene set analysis method based on GSZ (Gene Set Z-score) statistics and asymptotic p-value. mGSZ is different from the standard GSZ method in that it assigns asymptotic p-values to the gene set scores instead of empirical p-values.

::DEVELOPER

Liisa Holm’s Bioinformatics Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux / MacOS
  • R / MatLab

:: DOWNLOAD

 mGSZ / GSZ

:: MORE INFORMATION

Citation:

Gene Set Analysis: Limitations in popular existing methods and proposed improvements.
Mishra P, Törönen P, Leino Y, Holm L.
Bioinformatics. 2014 Jun 5. pii: btu374.

BMC Bioinformatics. 2009 Sep 23;10:307. doi: 10.1186/1471-2105-10-307.
Robust extraction of functional signals from gene set analysis using a generalized threshold free scoring function.
Törönen P1, Ojala PJ, Marttinen P, Holm L.

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