METAREP (JCVI Metagenomics Reports) is a new open source tool for high-performance comparative metagenomics. It provides a suite of web based tools to help scientists to view, query, browse and compare metagenomics annotation data derived from ORFs called on metagenomics reads.
METAREP supports browsing of functional and taxonomic assignments. Users can either specify fields, or logical combinations of fields to flexibly filter datasets on the fly. Users can compare multiple datasets at various functional and taxonomic levels applying statistical tests as well as hierarchical clustering, multidimensional scaling and heatmaps.
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Johannes Goll etc.
METAREP: JCVI metagenomics reports—an open source tool for high-performance comparative metagenomics
Bioinformatics (2010) 26 (20): 2631-2632.