Apr 282015
 

MEGADOCK 4.0.2 / MEGADOCK-K 3.0 / MEGADOCK-GPU 1.0

:: DESCRIPTION

MEGADOCK is an fft-based protein-protein docking system for all-to-all protein-protein interaction predictions.

MEGADOCK-K is an MEGADOCK on K computer

MEGADOCK-GPU is an ultra-fast protein-protein docking software on GPUs.

::DEVELOPER

Akiyama Laboratory, Tokyo Institute of Technology

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • C++ Compiler
  • FFTW3
:: DOWNLOAD

  MEGADOCK / MEGADOCK-K/ MEGADOCK-GPU

:: MORE INFORMATION

Citation

MEGADOCK 4.0: an ultra-high-performance protein-protein docking software for heterogeneous supercomputers.
Ohue M, Shimoda T, Suzuki S, Matsuzaki Y, Ishida T, Akiyama Y.
Bioinformatics. 2014 Aug 6. pii: btu532.

MEGADOCK 3.0: a high-performance protein-protein interaction prediction software using hybrid parallel computing for petascale supercomputing environments.
Matsuzaki Y, Uchikoga N, Ohue M, Shimoda T, Sato T, Ishida T, Akiyama Y.
Source Code Biol Med. 2013 Sep 3;8(1):18

MEGADOCK: An All-to-all Protein-protein Interaction Prediction System Using Tertiary Structure Data.
Ohue M, Matsuzaki Y, Uchikoga N, Ishida T, Akiyama Y.
Protein Pept Lett. 2013 Jul 9

Takehiro Shimoda, Takashi Ishida, Shuji Suzuki, Masahito Ohue, Yutaka Akiyama.
MEGADOCK-GPU: An accelerated protein-protein docking calculation on GPUs,
Parallel and Cloud-based Bioinformatics and Biomedicine, 2013. (accepted)

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