Mar 242014
 

Meander 1.0

:: DESCRIPTION

Meander is a java standalone application for visualization of genomics based on Read Depth (RD) and Pair-End (PE) information. It is mainly developed to visually discover and explore structural variations in a genome. Meander utilizes both a linear (1024 pixels) and a Hilbert curve-based representation (2D plane of 512×512 pixels) to visualize genomic variations. It is able to show data 5 different resolution levels while it can additionally overlay already predicted variations from external software. It supports a  comparison of four different samples against a common reference simultaneously while it is able to highlihght SVs  supported by double evidence (RD + PE)

::DEVELOPER

Meander team

:: SCREENSHOTS

Meander

:: REQUIREMENTS

  • Linux / Windows/ MacOsX
  • Java

:: DOWNLOAD

 Meander

:: MORE INFORMATION

Citation

Nucleic Acids Res. 2013 Jun;41(11):e118. doi: 10.1093/nar/gkt254. Epub 2013 Apr 19.
Meander: visually exploring the structural variome using space-filling curves.
Pavlopoulos GA, Kumar P, Sifrim A, Sakai R, Lin ML, Voet T, Moreau Y, Aerts J.

21 views

Sorry, the comment form is closed at this time.