Meander is a java standalone application for visualization of genomics based on Read Depth (RD) and Pair-End (PE) information. It is mainly developed to visually discover and explore structural variations in a genome. Meander utilizes both a linear (1024 pixels) and a Hilbert curve-based representation (2D plane of 512×512 pixels) to visualize genomic variations. It is able to show data 5 different resolution levels while it can additionally overlay already predicted variations from external software. It supports a comparison of four different samples against a common reference simultaneously while it is able to highlihght SVs supported by double evidence (RD + PE)
- Linux / Windows/ MacOsX
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Nucleic Acids Res. 2013 Jun;41(11):e118. doi: 10.1093/nar/gkt254. Epub 2013 Apr 19.
Meander: visually exploring the structural variome using space-filling curves.
Pavlopoulos GA, Kumar P, Sifrim A, Sakai R, Lin ML, Voet T, Moreau Y, Aerts J.