MDWeb / MDMoby – Web-based Platform for Molecular Dynamics Simulations

MDWeb / MDMoby


MDWeb is a personal workspace providing standard protocols to prepare structures, run standard molecular dynamics simulations and to analyze trajectories. MDWeb and MDMoby constitute a web-based platform to help access to molecular dynamics (MD) in the standard and high-throughput regime. The platform provides tools to prepare systems from PDB structures mimicking the procedures followed by human experts. It provides inputs and can send simulations for three of the most popular MD packages (Amber, NAMD and Gromacs). Tools for analysis of trajectories, either provided by the user or retrieved from our MoDEL database are also incorporated.



the Molecular Recognition & Bioinformatics Group.



  • Web Browser





MDWeb and MDMoby: an integrated web-based platform for molecular dynamics simulations.
Hospital A, Andrio P, Fenollosa C, Cicin-Sain D, Orozco M, Gelpí JL.
Bioinformatics. 2012 May 1;28(9):1278-9. Epub 2012 Mar 21.

Leave a Reply

Your email address will not be published. Required fields are marked *

This site uses Akismet to reduce spam. Learn how your comment data is processed.