Jul 102015
 

MaryGold 0.2

:: DESCRIPTION

MaryGold is an algorithm for finding and visualising variation within and between metagenome sequence datasets. By decomposing contig graphs into bi- and triconnected components MaryGold generates potential source-sink pairs of a bubbles that represent sequence variation.

::DEVELOPER

The Delft Bioinformatics Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Python

:: DOWNLOAD

 MaryGold

:: MORE INFORMATION

Citation

Bioinformatics. 2013 Nov 15;29(22):2826-34. doi: 10.1093/bioinformatics/btt502. Epub 2013 Sep 20.
Exploring variation-aware contig graphs for (comparative) metagenomics using MaryGold.
Nijkamp JF1, Pop M, Reinders MJ, de Ridder D.

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