Mapsembler is a targeted assembly software. It takes as input a set of NGS raw reads and a set of input sequences (starters). It first determines if each starter is read-coherent, e.g. whether reads confirm the presence of each starter in the original sequence. Then for each read-coherent starter, Mapsembler outputs its sequence neighborhood as a linear sequence or as a graph, depending on the user choice.
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Mapsembler, targeted assembly of larges genomes on a desktop computer
Peterlongo P., Chikhi R.
N° RR-7565 (2011) [inria-00577218 – version 1]