Jun 292011
 

MAmodel 20060511

:: DESCRIPTION

MAmodel is a microarray simulation model which can be used to validate different kinds of data analysis algorithms. The proposed model is unique in the sense that it includes all the steps that affect the quality of real microarray data. These steps include the simulation of biological ground truth data, applying biological and measurement technology specific error models, and finally simulating the microarray slide manufacturing and hybridization. After all these steps are taken into account, the simulated data has realistic biological and statistical characteristics.

::DEVELOPER

Computational Systems Biology Research group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux / MacOsX
  • MATLAB

:: DOWNLOAD

MAmodel

:: MORE INFORMATION

Citation:

M. Nykter, T. Aho, M. Ahdesmäki, P. Ruusuvuori, A. Lehmussola, and O. Yli-Harja.
Simulation of microarray data with realistic characteristics.
BMC Bioinformatics, 7(349), 2006.

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