MaM (Multiple Alignment Manipulator) is a software tool that processes and manipulates multiple alignments of genomic sequences.MaM computes the exact locations of common repeat elements in multiple aligned sequences, provided by a variety of user identified programs databases and tables.
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“Manipulating Multiple Sequence Alignments via MaM and WebMaM“,
Can Alkan, Eray Tuzun, Jerome Buard, Franck Lethiec, Evan E. Eichler, Jeffrey A. Bailey, S. Cenk Sahinalp.
Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W295-8.