Aug 092012
 

M-GCAT 2.0 beta

:: DESCRIPTION

M-GCAT is a tool for rapidly visualizing and aligning the most highly conserved regions in multiple (typically prokaryote) genomes. M-GCAT is based upon a highly efficient approach to anchor-based multiple genome comparison using a compressed suffix graph and thus can construct multiple genome alignment frameworks in closely related species usually in a few minutes. A couple of important limitations include (1) input sequences MUST be assembled, and (2) the comparison is reference-sequence biased.

::DEVELOPER

 the Algorithmics and Genetics Group 

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux / Windows/ MacOsX
  • Python

:: DOWNLOAD

 M-GCAT

:: MORE INFORMATION

Citation

T. Treangen and X. Messeguer.
M-GCAT: Interactively and efficiently constructing large-scale multiple genome comparison frameworks in closely related species.
BMC Bioinformatics 2006, 7:433.

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