Jan 312012
 

LPPH

:: DESCRIPTION

LPPH (Linear-Time Algorithm for Perfect Phylogeny Haplotyping) is a linear-time program for inferring haplotypes from genotypes to determine if there are resulting haplotypes that fit a tree model.In more population genetic terms, LPPH determines whether a set of SNP genotypes can be explained by haplotype pairs that could have evolved on a coalescent under the no-recombination, infinite sites model. Hence it determines for SNP genotype data what the three or four gametes test (depending on whether the tree is rooted or not) determines for haplotype data.

::DEVELOPER

Dan Gusfield’s group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/Windows

:: DOWNLOAD

 LPPH

:: MORE INFORMATION

Citation

A linear-time algorithm to the Perfect Phylogeny Haplotyping (PPH) Problem.
Z. Ding, V. Filkov and D. Gusfield
J Comput Biol. 2006 Mar;13(2):522-53.

262 views

Sorry, the comment form is closed at this time.