Jan 092016
 

LocARNA 1.8.7

:: DESCRIPTION

LocARNA is a package of tools for producing fast and high-quality pairwise and multiple alignment of RNA sequences. It uses a complex RNA energy model for simultaneous folding and sequence/structure alignment of the RNAs. LocARNA performs global, sequence local, or even structurally local alignment of the molecules.

::DEVELOPER

Bioinformatics Group
Albert-Ludwigs-University Freiburg

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

  LocARNA

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2014 Dec 31;15(1):6602. [Epub ahead of print]
ExpaRNA-P: simultaneous exact pattern matching and folding of RNAs.
Otto C, Möhl M, Heyne S, Amit M, Landau GM, Backofen R, Will S.

RNA. 2012 May;18(5):900-14. doi: 10.1261/rna.029041.111. Epub 2012 Mar 26.
LocARNA-P: accurate boundary prediction and improved detection of structural RNAs.
Will S1, Joshi T, Hofacker IL, Stadler PF, Backofen R.

Freiburg RNA Tools: a web server integrating IntaRNA, ExpaRNA and LocARNA
Cameron Smith, Steffen Heyne, Andreas S. Richter, Sebastian Will, Rolf Backofen
In: Nucleic Acids Research, 2010, 38 Suppl, W373-7

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