LINNAEUS is a general-purpose dictionary matching software, capable of processing multiple types of document formats in the biomedical domain (MEDLINE, PMC, BMC, OTMI, text, etc.). It can produce multiple types of output (XML, HTML, tab-separated-value file, or save to a database). It also contains methods for acting as a server (including load balancing across several servers), allowing clients to request matching over a network. A package with files for recognizing and identifying species names is available for LINNAEUS, showing 94% recall and 97% precision compared to LINNAEUS-species-corpus.
- Linux / Windows / MacOsX
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Martin Gerner, Goran Nenadic and Casey M Bergman
LINNAEUS: A species name identification system for biomedical literature
BMC Bioinformatics 2010, 11:85