Jul 192016
 

LightAssembler

:: DESCRIPTION

LightAssembler is a lightweight assembly algorithm designed to be executed on a desktop machine. It uses a pair of cache oblivious Bloom filters, one holding a uniform sample of g-spaced sequenced k-mers and the other holding k-mers classified as likely correct, using a simple statistical test.

::DEVELOPER

Sara El-Metwally

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 LightAssembler

:: MORE INFORMATION

Citation

LightAssembler: fast and memory-efficient assembly algorithm for high-throughput sequencing reads.
El-Metwally S, Zakaria M, Hamza T.
Bioinformatics. 2016 Jul 13. pii: btw470.

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