LGA 1.1 – Large Grain Alignment

LGA 1.1

:: DESCRIPTION

LGA (Large Grain Alignment) is a software package that iterates through phases of multiple sequence alignment, phylogeny searches and calculating substitution matrices to provide a large grain optimization alignment that provides more refined alignments then packages like ClustalW and overcomes limitations in current optimization alignment packages such as POY.

::DEVELOPER

maintained by Hyrum Carroll

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows
  • perl

:: DOWNLOAD

 LGA

:: MORE INFORMATION

Citation

Ridge, P.; Carroll, H.; Sneddon, D.; Clement, M.; Snell, Q.;
Large Grain Size Stochastic Optimization Alignment
BioInformatics and BioEngineering, 2006. BIBE 2006. Sixth IEEE Symposium on

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