LDMhap (LD Mapping with Haplotype Data) is a program of mapping disease genes (including location and confidence interval) by using haplotypes with disease mutation and the haplotypes without disease mutation (or allele frequencies in normal population).
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S. Zhang and H. Zhao. (2000)
Linkage disequilibrium mapping in populations of variable size using the decay of haplotype sharing and a stepwise-mutation model.
Genetic Epidemiology, 19: S99-S105