LCS-HIT (Longest Common Subsequence based sequence clustering tool with High IdenTity) is a sequecence clustering tool very similar to CD-HIT. LCS-HIT is over 2 times more efficient than CD-HIT by using the filtering based on the longest common subsequence (LCS) of two sequecences.
Akiyama Laboratory, Tokyo Institute of Technology
- C++ Compiler
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BMC Bioinformatics. 2013;14 Suppl 8:S7. doi: 10.1186/1471-2105-14-S8-S7.
Acceleration of sequence clustering using longest common subsequence filtering.
Namiki Y, Ishida T, Akiyama Y.