lapels 1.0.7 – Remapper and Annotator of in silico (pseudo) Genome Alignments

lapels 1.0.7

:: DESCRIPTION

Lapels is used to remap in silico (pseudo) genome alignments, in the form of a BAM file, back to the reference sequence. This entails the removal of all indels (via the cigar string modifications, the underlying sequence is unaltered) and adjustment fragment and mate starting positions. Lapels also annotates the number and types (SNPs, insertions, and deletions) of allele variants seen in each read.

::DEVELOPER

Wei Wang

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/Linux/MacOsX
  • Python

:: DOWNLOAD

 lapels

:: MORE INFORMATION