Dec 072012
 

LadderFinder 0.1.0

:: DESCRIPTION

LadderFinder is a program designed to solve a problem in DNA genotyping. It helps in the construction of allelic ladders that drive the sizing and binning of SSR fragments produced by PCR. The algorithm scans a spreadsheet containing a database of individual profiles and finds a minimum set of individuals, that covers the maximum number of alleles represented in the database, with all alleles represented only once. The last constraint is imposed to make homogeneous the ladder peaks in the pherograms. Given such a constrain, the best solution may not include all alleles.

::DEVELOPER

Istituto di Genomica Applicata and at University of Udine.

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux / Windows / MacOsX
  • Java

:: DOWNLOAD

  LadderFinder

:: MORE INFORMATION

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