KnotShape / KnotStructure
KnotShape / KnotStructure was applied to predict shapes and secondary structures on hundreds of ncRNA data sets with and without psuedoknots.
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BMC Bioinformatics. 2013;14 Suppl 2:S1. doi: 10.1186/1471-2105-14-S2-S1. Epub 2013 Jan 21.
Shape and secondary structure prediction for ncRNAs including pseudoknots based on linear SVM.
Achawanantakun R1, Sun Y.