KNetFold is a new software for predicting the consensus secondary structure for a given alignment of RNA sequences. It uses an innovative classifier system (a hierarchical network of k-nearest neighbor classifiers) to compute for each pair of alignment positions a “base pair” or “no base pair” prediction.
:: MORE INFORMATION
Bindewald, E and Shapiro B.A (2006):
RNA secondary structure prediction from sequence alignments using a network of k-nearest neighbor classifiers.
RNA. 12(3): 342-352 (2006).