Kinannote identifies and classifies protein kinases in a user-provided fasta file using an HMM derived from serine/threonine protein kinases, a position specific scoring matrix derived from the HMM, and comparison with a local version of the curated kinase database from kinase.com. If the user inputs a complete proteome, additional modules evaluate the completeness of the kinome and place it in context with reference kinomes.
- hmmer 2
- Blast 2.24
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Bioinformatics. 2013 Oct 1;29(19):2387-94. doi: 10.1093/bioinformatics/btt419. Epub 2013 Jul 31.
Kinannote, a computer program to identify and classify members of the eukaryotic protein kinase superfamily.
Goldberg JM, Griggs AD, Smith JL, Haas BJ, Wortman JR, Zeng Q.