JSBML 1.1 beta1 – Java library for SBML

JSBML 1.1 beta1


JSBML is a free, open-source, pure-Java library for working with SBML. It emulates libSBML’s API, with more Java idioms and without native object code.


JSBML is the library for reading, writing, and manipulating SBML files and data streams. It is an alternative to the mixed Java/native code-based interface provided in libSBML.


Andreas Dräger and Nicolas Rodriguez




  • Windows / Linux / Mac OsX
  • Java SE





JSBML 1.0: providing a smorgasbord of options to encode systems biology models.
Rodriguez N, Thomas A, Watanabe L, Vazirabad IY, Kofia V, Gómez HF, Mittag F, Matthes J, Rudolph J, Wrzodek F, Netz E, Diamantikos A, Eichner J, Keller R, Wrzodek C, Fröhlich S, Lewis NE, Myers CJ, Le Novère N, Palsson BØ, Hucka M, Dräger A.
Bioinformatics. 2015 Jun 16. pii: btv341

Bioinformatics. 2011 Aug 1;27(15):2167-8. doi: 10.1093/bioinformatics/btr361. Epub 2011 Jun 22.
JSBML: a flexible Java library for working with SBML.
Dräger A, Rodriguez N, Dumousseau M, Dörr A, Wrzodek C, Le Novère N, Zell A, Hucka M.

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