JBD – Detect Binding Sites based on ChIP-chip data and Guides

JBD

:: DESCRIPTION

JBD (Joint Binding Deconvolution) uses additional easily obtainable experimental data about chromatin immunoprecipitation (ChIP) to improve the spatial resolution of the transcription factor binding locations inferred from ChIP followed by DNA microarray hybridization (ChIP-Chip) data.

::DEVELOPER

the Gifford Laboratory

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/ Windows/MacOsX
  • Matlab

:: DOWNLOAD

  JBD

:: MORE INFORMATION

Citation

Nat Biotechnol. 2006 Aug;24(8):963-70.
High-resolution computational models of genome binding events.
Qi Y, Rolfe A, MacIsaac KD, Gerber GK, Pokholok D, Zeitlinger J, Danford T, Dowell RD, Fraenkel E, Jaakkola TS, Young RA, Gifford DK.

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