JAGuaR 2.1 – Junction Alignment to Genome for Repositioning RNA-seq Reads

JAGuaR 2.1

:: DESCRIPTION

JAGuaR is an alignment protocol for paired end RNA-seq reads based on an extended reference.  It uses BWA to align reads to the genome and reference transcript models (including annotated exon-exon junctions) specifically allowing the possibility for a single read to span multiple exons.

::DEVELOPER

Yaron Butterfield

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows/ MacOsX
  • Python

:: DOWNLOAD

  JAGuaR

:: MORE INFORMATION