IRILmap (Intermated recombinant inbred lines Map) was developed to compute “actual” centiMorgan distances from MapMaker output files (result of “Map” command obtained with the “photo” command) obtained from IRIL data with “RI self” or “RI sib” options (see “Distance calculation” section for details). It is also possible to use IRILmap to convert Haldane distances into Kosambi’s, or reciprocally. Mapping data produced with other software than MapMaker can be used, provided that file formats are respected (see “Format specifications” section for details) and that distances were computed as for RILs by using Haldane & Waddington’s formula. For this purpose, tabulated files are also accepted in addition to MapMaker output files.
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IRILmap: linkage map distance correction for intermated recombinant inbred lines/advanced recombinant inbred strains.
Bioinformatics. (2005) Aug 15;21(16):3441-2