Nov 052015
 

iRefIndex 14 / iRefScape 1.18 / iRefR 1.13

:: DESCRIPTION

iRefIndex provides an index of protein interactions available in a number of primary interaction databases including BIND, BioGRID, CORUM, DIP, HPRD, InnateDB, IntAct, MatrixDB, MINT, MPact, MPIDB, MPPI and OPHID.

iRefScape is a plugin for Cytoscape that exposes iRefIndex data as a navigable graphical network.

iRefR is an R package that provides access to iRefIndex.

::DEVELOPER

Donaldson Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/Linux/MacOsX
  • R package / Cytoscape / Matlab
  • Java

:: DOWNLOAD

 iRefIndex / iRefScape / iRefR

:: MORE INFORMATION

Citation

iRefIndex: a consolidated protein interaction database with provenance.
Razick S, Magklaras G, Donaldson IM.
BMC Bioinformatics. 2008 Sep 30;9:405.

BMC Bioinformatics. 2011 Oct 5;12:388.
iRefScape. A Cytoscape plug-in for visualization and data mining of protein interaction data from iRefIndex.
Razick S, Mora A, Michalickova K, Boddie P, Donaldson IM.

Antonio Mora and Ian M Donaldson
iRefR: an R package to manipulate the iRefIndex consolidated protein interaction database.
BMC Bioinformatics 2011, 12:455

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