IncaRNAtion is a novel algorithm to design RNA sequences folding into target secondary structures with a predefined nucleotide distribution.
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Bioinformatics. 2013 Jul 1;29(13):i308-15. doi: 10.1093/bioinformatics/btt217.
A weighted sampling algorithm for the design of RNA sequences with targeted secondary structure and nucleotide distribution.
Reinharz V1, Ponty Y, Waldispühl J.