IMMpractical implements various Markov chain model-based methods for analysis of DNA sequences.Markov chain models are commonly used for content-based appraisal of coding potential in genomic DNA.
The Brendel Group @ Indiana University
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Sparks, M.E., Brendel, V. and Dorman, K.S. (2007)
Markov model variants for appraisal of coding potential in plant DNA.