Image Analysis
- Plasmo2D 1.0 – Aid Identification of Proteins from Plasmodium Falciparum
- Amira 5.4.3 – Visualization, Manipulatation of Life Science and Bio-medical Image
- Xmipp 3.0.1 – X-Windows-based Microscopy Image Processing Package
- DeStripe 2 – Removing stripe noise in AFM images
- Cross Checker 2.91 – Genetic Fingerprint Gel Image Analysis
- TACTICS 2.21 – MATLAB Platform For Customized Time-Lapse Microscopy Analysis
- YouScope 1.2 Beta – Open-source Microscope Control software
- MorphoGraphX – Visualization and Processing of 3D Biological Datasets
- ECC – Classification of Cells or other Biological Objects
- ACC 1.1 – Advanced Cell Classifier
- CellClassifier – Supervised Learning of Cellular Phenotypes
- Icy 1.3.2.0 – Open Community Platform for Bioimage Informatics
- GelQuest 3.1.7 – Analysis of DNA Fingerprints
- DigitizeIt 1.6 – Extract Data Values from Graphs
- Dicoogle 0.5A / Dicoogle Mobile 0.4 – Information Retrieval System for Medical images
- PhenoCapture 1.4 Build 584 – Scientific Image Capture and Analysis software
- NIS-Elements Viewer 4.00 b770 – View Image files and Datasets
- Bsoft 1.8.6 – Image & Molecular Processing in Structural Biology
- GSA Image Analyser 3.8.7 – 2D Images Analysis
- SerialEM 3.3.0 beta – Electron Tomography Data & Image Acquisition
- Image SXM 1.94 – Scanning Microscope Images Analysis
- BioImageXD 1.0 r1799 – Analysis & Visualization of Multidimensional Biomedical Images
- Bersoft Image Measurement 8.16 – Acquire, Measure, and Analyze Digital Images
- Volocity Demo 6.2.1 – Free 3D Imaging Software
- bioView3D 0.1.18 – Visualize 3D Stack Image
- TOMOJ 2.17 – Tools for Electron Tomography
- Engauge Digitizer 5.1 – Convert an Image File into Numbers
- OsiriX 5.6 – DICOM Viewer
- FiloDetect – Detect & Quantify Filopodia in Single-cell Fluorescence Confocal Microscopy Images
- OMERO 4.4.6 – Management & Analysis of Biological Microscope Images
- VisIt 2.6.1 – Visualization and Analysis tool for Viewing Scientific Data
- HCA-Vision 2.1.6 – Analysis of Cell Images
- BioImage Convert 1.53 – Image Conversion Utility
- topaln 0.1 – Topological Alignments for Cell Tracking
- ct3d 0.1 / at3d 0.1 – Cell Tracking Tools
- Micropilot v094 – Automation of Fluorescence Microscopy–based imaging
- imago 1.0 Beta 4 – Store, Organize, Search, and Analyze Scientific Images
- GoFigure 2.0.9.0 – Software package for the Analysis of in toto Image Sets
- sephaCe v3 – Segmentation of Adherent Biological Cell Boundaries
- Farsight 0.4.4 – Quantitative Tools for Studying Complex and Dynamic Biological Microenvironments from 4D/5D Microscopy Data
- EM3D 2.0 – Software for Electron Microscope Tomography
- Fiji 20130111 – Image Processing Package based on ImageJ
- ZEN 2011 Lite – Free of Charge Digital Image Software
- MIPAV 6.0.1 – Medical Image Processing, Analysis, and Visualization
- Fluorescence Spectraviewer 1.0 – Plot & Compare Spectra for iPhone/iPad
- FluoRender 2.10.1 – Rendering Tool for Confocal Microscopy data Visualization
- microManager 1.4.13 – ImageJ Plugin of Imaging & Control of Automated Microscopes
- Braincells 1.1 – Follow Cell and Axon Movements in Image Sequences
- YIF – Search Engine for retrieving Biomedical Images
- SCIMO 20100824 – Simple Computational Image Manager for Omics
- HypoTrace – Image Analysis Software for Measuring Hypocotyl Growth and Shape
- BEADS 1.1.13 – Spot Detection on 2-D Gel Images
- LSJuicer 0.2rc2 – Program for Squeezing Results from Linescan images
- ELLIPSE 2.08 – Image Analysis program
- Hybsweeper 02 – Detect High-density Plate Gridding Coordinates
- ImagePlane – Analysis of Images of the Animal S. Mediterranea
- AMASS – MSI Analysis by Semi-supervised Segmentation
- Annotor 1.0 – Manual Image Annotation software
- TeraStitcher 0.9 – 3D Stitching tool designed for Teravoxel-sized microscopy images
- Vaa3D 2.801 – Bioimage Visualization & Analysis
- Tool for Biomedical Image Processing & Detection of Cancer using ANN
- BMIPT 1.1 – Biomedical Image Processing Tool
- EMAN 2.06 – a suite of Scientific Image Processing tools
- Frida 1.1.0 – FRamework for Image Dataset Analysis
- MSight 3.0.2 – Image Analysis for LCMS
- CellProfiler 2.0 r11710 / CellProfiler Analyst 2.0 r11710 – Cell Image Analysis Software
- Confocal Assistant 4.02 – 3D Analysis of Confocal Images
- GSA Image Analyser Batch Edition 1.1.1 – Analyse Images in Batch Mode
- PFT3DR 20100707 – Compute 3D Reconstruction from 2D Projections of 3D Objects
- Bio-Formats 4.4.4 – Java Library for Reading & Writing Biology Image File Formats
- IMOD 4.5.7 – Tomographic 3D Reconstruction & Modeling
- FreeSFP – FREE Volume Rendering with one push on a button
- Huygens 4.2 – 3D Huygens Deconvolution & Analysis Software
- GetData 2.25 – Digitize Graphs and Plots
- ImageJ 1.46 – Image Processing & Analysis in Java
- ImageTool 3.0 – Image Processing and Analysis Program
- OBCOL 1.45 – Organelle-based Colocalisation Analysis
- Dancer 1.1.1 – Digital Anatomical Reconstruction of Gene Expression data
- Spot 3.2 – Analysis of Microarray Images
- Make2D-DB II 3.10.2 – Gel Electrophoresis 2D-PAGE Databases
- HTPheno – Image Analysis Pipeline for High-Throughput Phenotyping
- BmpFrame 0.01 – Draw a Frame with Tick Marks around an 8-bit Bitmap
- Mr T – Tomography software written in Python.
- DeadEasy Mito-Glia – Counting of Mitotic Cells and Glial Cells in Drosophila
- DeadEasy Neurons – Count Neuronal Nuclei Stained with HB9 in whole Drosophila Embryos
- DeadEasy Caspase – Counting of Apoptotic Cells in Drosophila
- GelyMac – Calculate DNA Fragment sizes from Gel Electrophoresis Migration data
- FindEM 2.0 – Fast Local Correlation Function Particle Picker
- DoGpicker 0.2 – Particle Picker
- ACE 2.4 / ACE2 1.0 – Automated CTF Estimation
- Appion – Analysis of Electron Micrographs
- TiltPicker 2.0b13 – Particle Picker for Image Tilt Pairs
- Image 3.10 – The Fingerprint Image Analysis system
- StackMeasure 1.0 – ImageJ Plugin to identify features of interest and measure the distance
- SparkSpotter 1.1 – ImageJ plugin to identify ‘Spark’ events
- FRETSaw 1.0 – Image Browser for Examining Pairs of images generated by a FRET experiment
- FocalPoint 0.5 – Image Browser designed to work with more Complex Image Type
- Seg2Dgel 0.5.12 – 2D Electrophoresis Gel Spot Segmenter
- JVirGel 2.2.3 – Create Virtual 2D Pretein Gel
- Open2Dprot 20060607 – Proteomics Exploratory Data Analysis Software
- Flicker 0.87.2 – Compare 2D Gel Images
- Fragmentation - Fragmentation of the Gel Image into Sections
- TopSpot 3.0 – Analysis of the Gel Image
- CASP 1.2.3beta1 – Image Analysis of Comet Assay
- LaneRuler 1.1 – Identify Lanes in Gel Image
- GelScape 20030728 – Web-based Gel Viewing and Annotation System
- Paris 2.0 – Manage and Analyse Data from 2D Electrophoresis Proteomic Image
- TotalLab Quant 12 – Analysis Tools for Quantitative Image Analysis
- SwarmPS 0.9.3 – Particle Selection from Electron Micrograph Data set
- iCluster 1.05 – SubCellular Localisation Image Visualiser
- ZeissToSGI 1.1 – Convert Zeiss AxioVision TIFF files to files that can be read by SoftWoRx
- BlurLab 0.9 – 3D Simulated Microscopy Software Package
- SAFA 1.1 – Semi Automated Footprinting Analysis
- MOSAIC 201011 – ImageJ plugin for Biological Fluorescence Microscopy
- Volume Browser 2.0.393 – View Three Dimensional Images over the internet
- AFINITI 1.0 – Volumetrics Measurement of Human Brain Tumor
- GCellIQ 1.0 – Genomic Cell Image Quantitator
- DCellIQ 1.0 – Quantitative Time-lapse Nuclei Image Analysis
- NeuriteIQ 1.0 – Quantitative Neurite Image Analysis
- NeuronIQ 1.5 – Quantitative Neuron Image Analysis
- ZFIQ 1.0 – Quantitative Zebrafish Image Analysis
- AxonTracker 1.0 – Track and Label Axon Structures
- BDB 0.91 – Deformable Curve in n-dim
- VANO 1.741 – 3D Image Annotator
- CellExplorer 1.0 – 3D C. elegans atlas Building & Application Tools
- TinyQuant v1.55 – Gel Image Analysis
- ColorDecontmas 1.00 – ImageJ macros for Color Deconvolution for TMA images
- TMAJ 3.4.0 – Tissue MicroArrays Information & Image Analysis Software
- Gel Analyzer 2010a – 1D Gel Electrophoresis Image Analysis
- CP ATLAS 2.0 – Thin Layer and Gel Analysis Software
- CoPlot 6.4 – Software for Great Scientific Graphs, Maps, and Technical Drawings
- AngioQuant 1.33 – Quantification of Angiogenesis through Image Analysis
- SIMCEP 1.0 – Cell Image Simulator
- CellC 1.2 – Quantification of Labeled Bacteria by Automated Image Analysis
- Peak Explorer 2.11 – Automatic Processing of Spectra
- Graph Digitizer 2.16 – Digitization of Orthogonal Graphs
- WinDig 2.5 – Image Data Digitizer
- G3data 1.5.4 – Extract Data from Graphs
- UnGraph 5 – Digitizer Program Which Gives X,Y Coordinates of Lines or Points on Scanned Images
- QuantiScan 3.0 – Densitometry using Ordinary Office Scanners
- Phoretix 1D / Phoretix 1D Pro – 1D Gel Analysis
- MELANIE VIEWER 7.0 – Visualize Gels and Related Data obtained from Melanie
- Melanie 7.0 – 2D Gel Analysis Platform
- CMEIAS Color Segmentation 1.0 – Segment & Analyze Foreground Objects within Complex Images
- CMEIAS 1.27 – Microbial Ecology Image Analysis Software
- Visual3D 1.2 – Generate 3D Visualization of Fluorescence Microscopy Images
- Deconvolve 2.1 – Remote Batch Restorations of 3D/2D Fluorescence Images
- top2maya – View 2D Atomic Force microscope Images as 3D Objects
- ViewIt 4.23 – Multidimensional Image Processing Software
- tkImgDip 1.00b0 – Data Image Portal
- Suprim 5.3.1 – Process Electron Microscopy Image
- JavaScope 1.01 – Operate Philips CM200 Microscope & View Digital Images Remotely
- Dapple 0.88pre4 – DNA Microarrays Image Analysis
- NIH Image 1.63 – Image Processing & Analysis for the Macintosh
- VisBio 3.40rc1 – Biological Visualization Tool
- 3D Nuclei Detector Matlab Toolbox 0.1 – Identify Nuclei Centroid Locations
- BQJavaLib 0.1 – Java Library for Matlab to Direct Access to the Bisque DataBase System.
- BQMatlabToolbox 0.1 – Direct Access to the Bisque DataBase System
- ITCN 1.6 – ImageJ Plugin for Image-based Tool for Counting Nuclei
- BQBisqueJ 0.1 – ImageJ plugin for Bisque DataBase System
- bioView 1.1.18 – Visualize EM, Confocal, etc. Biology Imagery
- Digital Notebook 1.2.28 – Image Management & Annotation
- Bisque 0.4.9 – Platform for Bioimage Analysis & Management
- Segtrack – C++ & MatLab Library for Image Tracking & Segmentation
- Sassign 2 – C++ & MatLab Library for Image Target Tracking
- Costanza 1.0 – ImageJ Plugin for Image Segmentation & Analyzing Stacks
- CLSM Tools 20080903 – MATLAB Library for Nuclear Segmentation & Lineage Analysis
- ALFmap 1.22 – Convert ALF Format File into Bitmap File
- MAGIC Tool 2.1 – MicroArray Genome Imaging & Clustering Tool
- Spotfinder v3.2.1 – Microarray Images Analysis & Gene Expression Quantification
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