iCORN is a software to correct reference genome sequences. The main idea is to iteratively map reads and find differences in the sequence: as the sequence is corrected a greater proportion of the reads are able to map. Results are exported for Artemis or Gap4 for visualisation.
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Iterative Correction of Reference Nucleotides (iCORN) using second generation sequencing technology.
Otto TD, Sanders M, Berriman M and Newbold C
Bioinformatics (Oxford, England) 2010;26;14;1704-7