Jun 062016
 

i3Drefine / 3Drefine

:: DESCRIPTION

i3Drefine is a completely automated and computationally efficient protein 3D structure refinement method which based on an iterative and highly convergent energy minimization algorithm with a powerful all-atom composite physics and knowledge-based force fields and hydrogen bonding (HB) network optimization technique.

3Drefine: protein structure refinement server

::DEVELOPER

Dr. Jianlin Cheng’s Bioinformatics and Systems Biology Laboratory

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 i3Drefine

:: MORE INFORMATION

Citation

3Drefine: an interactive web server for efficient protein structure refinement.
Bhattacharya D, Nowotny J, Cao R, Cheng J.
Nucleic Acids Res. 2016 Apr 29. pii: gkw336

3Drefine: consistent protein structure refinement by optimizing hydrogen bonding network and atomic-level energy minimization.
Bhattacharya D, Cheng J.
Proteins. 2013 Jan;81(1):119-31. doi: 10.1002/prot.24167.

PLoS One. 2013 Jul 19;8(7):e69648. doi: 10.1371/journal.pone.0069648. Print 2013.
i3Drefine software for protein 3D structure refinement and its assessment in CASP10.
Bhattacharya D1, Cheng J.

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