HydroPaCe is a software to detect conserved patterns. Interfaces are modeled as graphs of atomic apolar interactions and hydrophobic patches are computed and summarized by centroids (HP-centroids), and their conservation is detected.
- Linux / MacOsX / Windows
- R package
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Bioinformatics. 2012 Feb 1;28(3):342-9. doi: 10.1093/bioinformatics/btr680. Epub 2011 Dec 9.
HydroPaCe: understanding and predicting cross-inhibition in serine proteases through hydrophobic patch centroids.
Gonçalves-Almeida VM, Pires DE, de Melo-Minardi RC, da Silveira CH, Meira W, Santoro MM.