HTPheno is a software for high-throughput plant phenotyping is presented. HTPheno is implemented as a plugin for ImageJ, an open source image processing software. It provides the possibility to analyse colour images of plants which are taken in two different views (top view and side view) during a screening. Within the analysis different phenotypical parameters for each plant such as height, width and projected shoot area of the plants are calculated for the duration of the screening.
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A. Hartmann, T. Czauderna, R. Hoffmann, N. Stein and F. Schreiber.
HTPheno: An Image Analysis Pipeline for High-Throughput Plant Phenotyping.
BMC Bioinformatics, 12:e148, 2011.