HTPheno – Image Analysis Pipeline for High-Throughput Phenotyping

HTPheno

:: DESCRIPTION

HTPheno is a software for high-throughput plant phenotyping is presented. HTPheno is implemented as a plugin for ImageJ, an open source image processing software. It provides the possibility to analyse colour images of plants which are taken in two different views (top view and side view) during a screening. Within the analysis different phenotypical parameters for each plant such as height, width and projected shoot area of the plants are calculated for the duration of the screening.

::DEVELOPER

HTPheno Team

:: SCREENSHOTS

:: REQUIREMENTS

:: DOWNLOAD

 HTPheno

:: MORE INFORMATION

Citation

A. Hartmann, T. Czauderna, R. Hoffmann, N. Stein and F. Schreiber.
HTPheno: An Image Analysis Pipeline for High-Throughput Plant Phenotyping.
BMC Bioinformatics, 12:e148, 2011.

Leave a Reply

Your email address will not be published. Required fields are marked *

 

This site uses Akismet to reduce spam. Learn how your comment data is processed.