hsphase is an R package that implements a very fast method for phasing, sire genotype imputation, identification of paternal strand of origin and recombination events in half-sib families
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BMC Bioinformatics. 2014 Jun 7;15:172. doi: 10.1186/1471-2105-15-172.
hsphase: an R package for pedigree reconstruction, detection of recombination events, phasing and imputation of half-sib family groups.
Ferdosi MH1, Kinghorn BP, van der Werf JH, Lee SH, Gondro C.