Feb 182016
 

HMMER 3.1b2

:: DESCRIPTION

HMMER is used for searching sequence databases for homologs of protein sequences, and for making protein sequence alignments. It implements methods using probabilistic models called profile hidden Markov models Profile Hidden Markov Models for Sequence Analysis.

::DEVELOPER

Eddy lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / MacOsX

:: DOWNLOAD

HMMER

:: MORE INFORMATION

Citation

HMMER web server: 2015 update.
Finn RD, Clements J, Arndt W, Miller BL, Wheeler TJ, Schreiber F, Bateman A, Eddy SR.
Nucleic Acids Res. 2015 May 5. pii: gkv397.

HMMER web server: interactive sequence similarity searching
R.D. Finn, J. Clements, S.R. Eddy
Nucl. Acids Res. (2011) 39 (suppl 2): W29-W37

R. Durbin, S. Eddy, A. Krogh, and G. Mitchison,
Biological sequence analysis: probabilistic models of proteins and nucleic acids,
Cambridge University Press, 1998.

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