HLAminer is a software for HLA class I predictions from next-generation shotgun (NGS) sequence read data that supports direct read alignment (HPRA) and targeted assembly of sequence reads (HPTASR).
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Genome Med. 2012 Dec 10;4(12):95.
Derivation of HLA types from shotgun sequence datasets.
Warren RL, Choe G, Freeman DJ, Castellarin M, Munro S, Moore R, Holt RA.